PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1836s0050.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 433aa    MW: 48456.6 Da    PI: 5.2364
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1836s0050.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.32.3e-27148213171
                 E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  SapurV1A.1836s0050.4.p 148 RYDSSLGLLTKKFINLIKHAEDGVLDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 213
                             6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.2E-35148213IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.08E-17148211IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-28148215IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.1E-24150213IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.60E-43225331No hitNo description
SuperFamilySSF1440748.63E-31227331No hitNo description
PfamPF164211.1E-31230329IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSNLQAPNNQ TMKQPQQNSM QSHAPNQRQQ FPFSSMEPQF LPPGDYHRFG VGQRRHVADH  60
EAEGIVAKPP TLKRKSDAAG HQGESSEWSA GHGYMELVTT PLQTPVSGKG GKTPKTLRLS  120
KSSKSASQSA AGALGTPGNN VTPTGPIRYD SSLGLLTKKF INLIKHAEDG VLDLNKAADT  180
LEVQKRRIYD ITNVLEGIGL IEKKLKNRIQ WKGLDVSRSG EGDDNNVATL QAEVENLTIE  240
EQKLDEQTRE MQERLSDLSE DEKNQKWLFV TKEDIKILPG FQNETLIAIK APHGTTLEVP  300
DPDEAVDYPQ RRYRIVFRST MGPIDVYLVS QFEEKFEDIQ EESRAKEIEM QEQNGHRMCS  360
ELNTSHDFVN GIMKIVPSDV NSDADYWLLS DADVSITDMW SNEGILANIL HCIYLICVLM  420
LLKVDQQKLS FP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-26143214274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1795060.0AY179506.1 Populus alba E2F mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312830.10.0E2F transcription factor-1 family protein
SwissprotQ9FV711e-144E2FB_ARATH; Transcription factor E2FB
TrEMBLB9HQ230.0B9HQ23_POPTR; E2F transcription factor-1 family protein
STRINGPOPTR_0009s16350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-140E2F transcription factor 1